rdkit.Chem.ChemUtils.AlignDepict module — The RDKit 2016.09.1 documentation

# rdkit.Chem.ChemUtils.AlignDepict module

`rdkit.Chem.ChemUtils.AlignDepict.` `AlignDepict`(mol, core, corePattern=None, acceptFailure=False)
  Arguments:
    - mol: the molecule to be aligned, this will come back

        with a single conformer.

    - core: a molecule with the core atoms to align to;

        this should have a depiction.

    - corePattern: (optional) an optional molecule to be used to

        generate the atom mapping between the molecule and the core.

`rdkit.Chem.ChemUtils.AlignDepict.` `initParser`()

  Initialize the parser

`rdkit.Chem.ChemUtils.AlignDepict.` `main`()

  Main application

`rdkit.Chem.ChemUtils.AlignDepict.` `processArgs`(args)