Identifier Index

[ A B C D E F G H I J K L M N O P Q R S T U V W X Y Z _ ]

A

A (in ADSparameter)	AddTree() (in Forest)	ArbAxisRotation() (in rdkit.Chem.Features.FeatDirUtilsRD)
Acceptors (in rdkit.Chem.QED)	AddVect() (in VectCollection)	AROM (in QEDproperties)
AcceptorSmarts (in rdkit.Chem.QED)	ADJUST_IGNOREALL (in rdkit.Chem)	AROMATIC (in BondType)
AccumulateCounts() (in rdkit.ML.EnrichPlot)	ADJUST_IGNOREALL (in rdkit.Chem.AllChem)	AROMATICITY_CUSTOM (in rdkit.Chem)
AccumulateVotes() (in InfoBitRanker)	ADJUST_IGNOREALL (in rdkit.Chem.rdmolops)	AROMATICITY_CUSTOM (in rdkit.Chem.AllChem)
AcidityLimit (in StructCheckerOptions)	ADJUST_IGNOREALL (in AdjustQueryWhichFlags)	AROMATICITY_CUSTOM (in rdkit.Chem.rdmolops)
actCol (in RunDetails)	ADJUST_IGNORECHAINS (in rdkit.Chem)	AROMATICITY_CUSTOM (in AromaticityModel)
ActFunc (in rdkit.ML.Neural.ActFuncs)	ADJUST_IGNORECHAINS (in rdkit.Chem.AllChem)	AROMATICITY_DEFAULT (in rdkit.Chem)
ActFuncs (in rdkit.ML.Neural)	ADJUST_IGNORECHAINS (in rdkit.Chem.rdmolops)	AROMATICITY_DEFAULT (in rdkit.Chem.AllChem)
ACYC_SMARTS (in rdkit.Chem.Fraggle.FraggleSim)	ADJUST_IGNORECHAINS (in AdjustQueryWhichFlags)	AROMATICITY_DEFAULT (in rdkit.Chem.rdmolops)
Add() (in RGroupDecomposition)	ADJUST_IGNOREDUMMIES (in rdkit.Chem)	AROMATICITY_DEFAULT (in AromaticityModel)
add_new_match() (in SingleBestAtoms)	ADJUST_IGNOREDUMMIES (in rdkit.Chem.AllChem)	AROMATICITY_RDKIT (in rdkit.Chem)
add_new_match() (in SingleBestAtomsCompleteRingsOnly)	ADJUST_IGNOREDUMMIES (in rdkit.Chem.rdmolops)	AROMATICITY_RDKIT (in rdkit.Chem.AllChem)
add_new_match() (in SingleBestBonds)	ADJUST_IGNOREDUMMIES (in AdjustQueryWhichFlags)	AROMATICITY_RDKIT (in rdkit.Chem.rdmolops)
add_new_match() (in SingleBestBondsCompleteRingsOnly)	ADJUST_IGNORENONDUMMIES (in rdkit.Chem)	AROMATICITY_RDKIT (in AromaticityModel)
AddAgentTemplate() (in ChemicalReaction)	ADJUST_IGNORENONDUMMIES (in rdkit.Chem.AllChem)	AROMATICITY_SIMPLE (in rdkit.Chem)
AddAtom() (in EditableMol)	ADJUST_IGNORENONDUMMIES (in rdkit.Chem.rdmolops)	AROMATICITY_SIMPLE (in rdkit.Chem.AllChem)
AddAtom() (in RWMol)	ADJUST_IGNORENONDUMMIES (in AdjustQueryWhichFlags)	AROMATICITY_SIMPLE (in rdkit.Chem.rdmolops)
AddBinary() (in CachedMolHolder)	ADJUST_IGNORENONE (in rdkit.Chem)	AROMATICITY_SIMPLE (in AromaticityModel)
AddBit() (in BitEnsemble)	ADJUST_IGNORENONE (in rdkit.Chem.AllChem)	AromaticityModel (in rdkit.Chem.rdmolops)
AddBond() (in EditableMol)	ADJUST_IGNORENONE (in rdkit.Chem.rdmolops)	aromaticNTransform (in rdkit.Chem.Scaffolds.MurckoScaffold)
AddBond() (in RWMol)	ADJUST_IGNORENONE (in AdjustQueryWhichFlags)	aromatizeIfPossible (in AdjustQueryParameters)
addCanvasDashedWedge() (in Canvas)	ADJUST_IGNORERINGS (in rdkit.Chem)	Asphericity() (in rdkit.Chem.Descriptors3D)
addCanvasDashedWedge() (in Canvas)	ADJUST_IGNORERINGS (in rdkit.Chem.AllChem)	assign_isotopes_from_class_tag() (in rdkit.Chem.fmcs.fmcs')
addCanvasDashedWedge() (in CanvasBase)	ADJUST_IGNORERINGS (in rdkit.Chem.rdmolops)	AssignAtomChiralTagsFromStructure() (in rdkit.Chem.rdmolops)
addCanvasDashedWedge() (in Canvas)	ADJUST_IGNORERINGS (in AdjustQueryWhichFlags)	AssignBondOrdersFromTemplate() (in rdkit.Chem.AllChem)
addCanvasDashedWedge() (in Canvas)	AdjustComposite (in rdkit.ML.Composite)	AssignMolFeatsToPoints() (in rdkit.Chem.Subshape.BuilderUtils)
addCanvasDashedWedge() (in Canvas)	adjustDegree (in AdjustQueryParameters)	AssignPattyTypes() (in rdkit.Chem.AtomPairs.Sheridan)
addCanvasLine() (in Canvas)	adjustDegreeFlags (in AdjustQueryParameters)	AssignRadicals() (in rdkit.Chem.rdmolops)
addCanvasLine() (in Canvas)	adjustHeavyDegree (in AdjustQueryParameters)	AssignStereochemistry() (in rdkit.Chem.rdmolops)
addCanvasLine() (in CanvasBase)	adjustHeavyDegreeFlags (in AdjustQueryParameters)	AsymmetricSimilarity() (in rdkit.DataStructs.cDataStructs)
addCanvasLine() (in Canvas)	AdjustQueryParameters (in rdkit.Chem.rdmolops)	atEnd() (in ResonanceMolSupplier)
addCanvasLine() (in Canvas)	AdjustQueryProperties() (in rdkit.Chem.rdmolops)	atEnd() (in ForwardSDMolSupplier)
addCanvasLine() (in Canvas)	AdjustQueryWhichFlags (in rdkit.Chem.rdmolops)	atEnd() (in SDMolSupplier)
addCanvasPolygon() (in Canvas)	adjustRingCount (in AdjustQueryParameters)	Atom (in rdkit.Chem.fmcs.fmcs')
addCanvasPolygon() (in Canvas)	adjustRingCountFlags (in AdjustQueryParameters)	Atom (in rdkit.Chem.rdchem)
addCanvasPolygon() (in CanvasBase)	ads() (in rdkit.Chem.QED)	atom_check_failed (in StruChkFlag)
addCanvasPolygon() (in Canvas)	ADSparameter (in rdkit.Chem.QED)	ATOM_CHECK_FAILED (in StructureFlags)
addCanvasPolygon() (in Canvas)	adsParameters (in rdkit.Chem.QED)	atom_clash (in StruChkFlag)
addCanvasPolygon() (in Canvas)	agentWeight (in ReactionFingerprintParams)	ATOM_CLASH (in StructureFlags)
addCanvasText() (in Canvas)	aggCanvas (in rdkit.Chem.Draw)	atom_indices (in Bond)
addCanvasText() (in Canvas)	aldehydePatt (in rdkit.Chem.SATIS)	atom_indices (in Subgraph)
addCanvasText() (in CanvasBase)	ALERTS (in QEDproperties)	atom_smarts (in Atom)
addCanvasText() (in Canvas)	alias_conversion_failed (in StruChkFlag)	atom_smarts (in CangenNode)
addCanvasText() (in Canvas)	ALIAS_CONVERSION_FAILED (in StructureFlags)	atom_typer_any() (in rdkit.Chem.fmcs.fmcs')
addCanvasText() (in Canvas)	Align() (in O3A)	atom_typer_isotopes() (in rdkit.Chem.fmcs.fmcs')
AddCatalog() (in FilterCatalogParams)	AlignDepict (in rdkit.Chem.ChemUtils)	atom_typers (in rdkit.Chem.fmcs.fmcs')
AddChild() (in FilterHierarchyMatcher)	AlignDepict() (in rdkit.Chem.ChemUtils.AlignDepict)	atomCompare (in Default)
AddChild() (in Cluster)	alignedConfId (in SubshapeAlignment)	AtomCompare (in rdkit.Chem.rdFMCS)
AddChild() (in DecTreeNode)	alignment (in RGroupDecompositionParameters)	AtomCompareParameters (in MCSParameters)
AddChild() (in TreeNode)	AlignMol() (in rdkit.Chem.PandasTools)	atomContrib() (in rdkit.Chem.Fraggle.FraggleSim)
AddChild() (in VLibNode)	AlignMol() (in rdkit.Chem.rdMolAlign)	AtomIndexLabels (in rdkit.Chem.rdRGroupDecomposition)
AddChildNode() (in TreeNode)	AlignMolConformers() (in rdkit.Chem.rdMolAlign)	AtomIndexLabels (in RGroupLabels)
AddChildren() (in Cluster)	AlignMolToTemplate2D() (in rdkit.Chem.TemplateAlign)	atomLabelDeuteriumTritium (in DrawingOptions)
addCircle() (in Canvas)	AlignToScaffold() (in rdkit.Chem.PandasTools)	atomLabelDeuteriumTritium (in MolDrawOptions)
AddColumn() (in DbConnect)	AliphaticRings (in rdkit.Chem.QED)	atomLabelFontFace (in DrawingOptions)
AddConformer() (in Mol)	All (in FeatMapScoreMode)	atomLabelFontSize (in DrawingOptions)
AddDistanceConstraint() (in ForceField)	ALL (in FilterCatalogs)	atomLabelMinFontSize (in DrawingOptions)
AddEdge() (in MolCatalog)	all_stereo_re (in rdkit.Chem.MolKey.InchiInfo)	atomLabels (in MolDrawOptions)
AddEntry() (in MolCatalog)	all_subgraph_extensions() (in rdkit.Chem.fmcs.fmcs')	AtomMap (in rdkit.Chem.rdRGroupDecomposition)
AddEntry() (in FilterCatalog)	AllBitSimilarity() (in rdkit.DataStructs.cDataStructs)	AtomMap (in RGroupLabelling)
AddExcludedVolumes() (in rdkit.Chem.Pharm3D.EmbedLib)	AllChem (in rdkit.Chem)	AtomMapLabels (in rdkit.Chem.rdRGroupDecomposition)
AddExclusion() (in FragmentMatcher)	ALLOW_CHARGE_SEPARATION (in rdkit.Chem)	AtomMapLabels (in RGroupLabels)
AddExtraPoint() (in ForceField)	ALLOW_CHARGE_SEPARATION (in rdkit.Chem.AllChem)	AtomMonomerInfo (in rdkit.Chem.rdchem)
AddFeatPoint() (in FeatMap)	ALLOW_CHARGE_SEPARATION (in rdkit.Chem.rdchem)	AtomMonomerType (in rdkit.Chem.rdchem)
AddFeature() (in FeatMap)	ALLOW_CHARGE_SEPARATION (in ResonanceFlags)	atomNumberOffset (in DrawingOptions)
AddFingerprint() (in FPHolderBase)	ALLOW_INCOMPLETE_OCTETS (in rdkit.Chem)	AtomNumEqualsQueryAtom() (in rdkit.Chem.rdqueries)
AddFixedPoint() (in ForceField)	ALLOW_INCOMPLETE_OCTETS (in rdkit.Chem.AllChem)	AtomNumGreaterQueryAtom() (in rdkit.Chem.rdqueries)
AddFragsFromMol() (in FragCatGenerator)	ALLOW_INCOMPLETE_OCTETS (in rdkit.Chem.rdchem)	AtomNumLessQueryAtom() (in rdkit.Chem.rdqueries)
AddHs() (in rdkit.Chem.rdmolops)	ALLOW_INCOMPLETE_OCTETS (in ResonanceFlags)	AtomPairFP (in FingerprintType)
additionalAtomLabelPadding (in MolDrawOptions)	allowCXSMILES (in SmilesParserParams)	AtomPairs (in rdkit.Chem)
AddModel() (in Composite)	AllProbeBitsMatch() (in rdkit.DataStructs.cDataStructs)	atomPairs (in FilterMatch)
AddMol() (in MolDrawing)	AllProps (in rdkit.Chem.AllChem)	AtomPairsParameters (in rdkit.Chem.rdMolDescriptors)
AddMol() (in FPHolderBase)	AllProps (in rdkit.Chem)	AtomPDBResidueInfo (in rdkit.Chem.rdchem)
AddMol() (in MolHolderBase)	AllProps (in rdkit.Chem.rdchem)	AtomProps (in rdkit.Chem.AllChem)
AddMol() (in SubstructLibrary)	AllProps (in PropertyPickleOptions)	AtomProps (in rdkit.Chem)
AddMol() (in MolBundle)	ALOGP (in QEDproperties)	AtomProps (in rdkit.Chem.rdchem)
AddMoleculeColumnToFrame() (in rdkit.Chem.PandasTools)	ALPHA (in rdkit.Chem.Features.ShowFeats)	AtomProps (in PropertyPickleOptions)
addMolToView() (in rdkit.Chem.Draw.IPythonConsole)	amidePatt (in rdkit.Chem.SATIS)	atomRegions (in MolDrawOptions)
AddMurckoToFrame() (in rdkit.Chem.PandasTools)	AnalyzeComposite (in rdkit.ML)	AtomRings() (in RingInfo)
AddParent() (in VLibNode)	AnalyzeSparseVects() (in rdkit.ML.InfoTheory.BitRank)	atoms (in EnumerationMolecule)
AddParent() (in SupplyNode)	AngleTo() (in Point2D)	AtomSmartsNoAromaticity (in rdkit.Chem.fmcs.fmcs')
AddPattern() (in ExclusionList)	AngleTo() (in Point3D)	AtomTypes (in rdkit.Chem.EState)
AddPharmacophore() (in MolViewer)	AngleTo() (in PointND)	atomTypes (in AtomPairsParameters)
AddPharmacophore() (in MolViewer)	AnnotateProperties() (in Properties)	atsFilter (in rdkit.VLib.NodeLib.demo)
AddPoint() (in MLDataSet)	apDict (in rdkit.Chem.Draw.SimilarityMaps)	AttachFileToLog() (in rdkit.rdBase')
AddPoints() (in MLDataSet)	append() (in ROMolList)	AutoDetect (in rdkit.Chem.rdRGroupDecomposition)
AddProductTemplate() (in ChemicalReaction)	append() (in VectMolVect)	AutoDetect (in RGroupLabels)
AddReactantTemplate() (in ChemicalReaction)	append() (in VectSizeT)	Avalon (in rdkit)
AddReader() (in MultiFPBReader)	append() (in VectorOfStringVectors)	avalonSimilarityBits (in rdkit.Avalon.pyAvalonTools)
AddRecursiveQueriesToReaction() (in ChemicalReaction)	append() (in MOL_SPTR_VECT)	avalonSSSBits (in rdkit.Avalon.pyAvalonTools)
AddRecursiveQuery() (in rdkit.Chem.rdmolops)	append() (in FilterCatalogEntryList)	Average (in MergeMethod)
AddSmiles() (in CachedSmilesMolHolder)	append() (in MatchTypeVect)	AverageErrors() (in Composite)
AddSmiles() (in CachedTrustedSmilesMolHolder)	append() (in MolList)	AverageErrors() (in Forest)
AddSupplementalData() (in ModelPackage)	append() (in VectFilterMatch)
AddTable() (in DbConnect)	AppendSkeletonPoints() (in rdkit.Chem.Subshape.BuilderUtils)