Identifier Index

[ A B C D E F G H I J K L M N O P Q R S T U V W X Y Z _ ]

_

__add__() (in pySparseIntVect)	__init__() (in TanH)	_cache_repl (in re)
__add__() (in DiscreteValueVect)	__init__() (in NetNode)	_CalcCrippenContribs() (in Chem.rdMolDescriptors)
__add__() (in IntSparseIntVect)	__init__() (in Network)	_CalcLabuteASAContribs() (in Chem.rdMolDescriptors)
__add__() (in LongSparseIntVect)	__init__() (in BackProp)	_CalcNPossible() (in MLDataSet)
__add__() (in Point2D)	__init__() (in ReFile)	_CalcNPossible() (in MLQuantDataSet)
__add__() (in Point3D)	__init__() (in SimilarityCalculator)	_CalculateEntropies() (in Chem.GraphDescriptors)
__add__() (in PointND)	__init__() (in SpreadPicker)	_canonArrowhead (in Chem.Features.ShowFeats)
__and__() (in BitVect)	__init__() (in TopNOverallPicker)	_CenterTForm() (in ML.Data.Transforms)
__and__() (in pySparseIntVect)	__init__() (in HierarchicalClusterPicker)	_cgoArrowhead() (in Chem.Features.ShowFeats)
__and__() (in DiscreteValueVect)	__init__() (in MaxMinPicker)	_checkBounds() (in Pharmacophore)
__and__() (in ExplicitBitVect)	__init__() (in FilterNode)	_checkMatch() (in Chem.Pharm3D.EmbedLib)
__and__() (in IntSparseIntVect)	__init__() (in VLibNode)	_checkMatchDirections() (in SubshapeAligner)
__and__() (in LongSparseIntVect)	__init__() (in DbMolSupplyNode)	_checkMatchFeatures() (in SubshapeAligner)
__and__() (in SparseBitVect)	__init__() (in DbPickleSupplyNode)	_checkMatchShape() (in SubshapeAligner)
__CalcCrippenDescriptors_version__ (in Chem.rdMolDescriptors)	__init__() (in _lazyDataSeq)	_checkPlanarity() (in Chem.Features.FeatDirUtils)
__CalcLabuteASA_version__ (in Chem.rdMolDescriptors)	__init__() (in SDSupplyNode)	_checkPlanarity() (in Chem.Features.FeatDirUtilsRD)
__call__() (in SubshapeAligner)	__init__() (in SmartsFilter)	_clusterInit() (in FingerprinterDetails)
__call__() (in SubshapeBuilder)	__init__() (in SmartsRemover)	_computeQuantBounds() (in NaiveBayesClassifier)
__call__() (in CDXImageTransformer)	__init__() (in DupeFilter)	_ConstructSQL() (in Chem.Fingerprints.MolSimilarity)
__call__() (in CactvsImageTransformer)	__init__() (in OutputNode)	_ConvertModelPerformance() (in ML.ModelPackage.PackageUtils)
__call__() (in RDImageTransformer)	__init__() (in SmilesSupplyNode)	_countCache (in Chem.Pharm2D.Utils)
__call__() (in ReportLabImageTransformer)	__init__() (in OutputNode)	_CountMatches() (in Chem.Fragments)
__call__() (in Callable)	__init__() (in SupplyNode)	_CreateBondDictEtc() (in Chem.GraphDescriptors)
__call__() (in ActFunc)	__init__() (in TransformNode)	_CreateTable() (in CompositeRun)
__cmp__() (in Cluster)	__init__() (in _listSt6vectorIiSaIiEE)	_cvsVersion (in Chem.BuildFragmentCatalog)
__cmp__() (in QuantTreeNode)	__init__() (in _listi)	_cvsVersion (in Chem.Fingerprints.ClusterMols)
__cmp__() (in TreeNode)	__init__() (in _vectSs)	_cvsVersion (in Chem.Fingerprints.FingerprintMols)
__contains__() (in _listPN5RDKit4AtomE)	__init__() (in _vectSt6vectorIdSaIdEE)	_cvsVersion (in Chem.Fingerprints.MolSimilarity)
__contains__() (in _listPN5RDKit4BondE)	__init__() (in _vectSt6vectorIiSaIiEE)	_dataSeq (in Chem.Fingerprints.MolSimilarity)
__contains__() (in _listSt6vectorIiSaIiEE)	__init__() (in _vectSt6vectorIjSaIjEE)	_dataSeq (in VLib.NodeLib.DbPickleSupplier)
__contains__() (in _listi)	__init__() (in _vectd)	_debug (in Chem.SATIS)
__contains__() (in _vectSs)	__init__() (in _vecti)	_details (in Dbase.Pubmed.QueryParams)
__contains__() (in _vectSt6vectorIdSaIdEE)	__init__() (in _vectj)	_details (in ML.ScreenComposite)
__contains__() (in _vectSt6vectorIiSaIiEE)	__instance_size__ (in ChemicalReaction)	_displaySubshapeSkelPt() (in Chem.Subshape.SubshapeObjects)
__contains__() (in _vectSt6vectorIjSaIjEE)	__instance_size__ (in FreeChemicalFeature)	_doLine() (in Chem.Draw.aggCanvas)
__contains__() (in _vectd)	__instance_size__ (in MolCatalog)	_drawBond() (in MolDrawing)
__contains__() (in _vecti)	__instance_size__ (in MolCatalogEntry)	_DrawClusterTree() (in ML.Cluster.ClusterVis)
__contains__() (in _vectj)	__instance_size__ (in AtomPairsParameters)	_drawLabel() (in MolDrawing)
__copyAll() (in Chem.FeatMaps.FeatMapUtils)	__instance_size__ (in Atom)	_DrawToLimit() (in ClusterRenderer)
__DEBUG (in ML.Descriptors.Parser)	__instance_size__ (in Conformer)	_drawWedgedBond() (in MolDrawing)
__del__() (in Displayable)	__instance_size__ (in EditableMol)	_ExampleCounter() (in ML.DecTree.TreeVis)
__del__() (in RecapHierarchyNode)	__instance_size__ (in Mol)	_exploder() (in Chem.ChemUtils.TemplateExpand)
__delitem__() (in _listPN5RDKit4AtomE)	__instance_size__ (in _listPN5RDKit4AtomE)	_fact() (in Chem.Pharm2D.Utils)
__delitem__() (in _listPN5RDKit4BondE)	__instance_size__ (in _listPN5RDKit4BondE)	_featColors (in Chem.Features.ShowFeats)
__delitem__() (in _listSt6vectorIiSaIiEE)	__instance_size__ (in FragCatGenerator)	_fieldsOfInterest (in JournalArticleRecord)
__delitem__() (in _listi)	__instance_size__ (in FragCatParams)	_fieldsOfInterest (in LinkRecord)
__delitem__() (in _vectSs)	__instance_size__ (in FragCatalog)	_fieldsOfInterest (in SummaryRecord)
__delitem__() (in _vectSt6vectorIdSaIdEE)	__instance_size__ (in FragFPGenerator)	_findAvgVec() (in Chem.Features.FeatDirUtils)
__delitem__() (in _vectSt6vectorIiSaIiEE)	__instance_size__ (in SDMolSupplier)	_findAvgVec() (in Chem.Features.FeatDirUtilsRD)
__delitem__() (in _vectSt6vectorIjSaIjEE)	__instance_size__ (in SDWriter)	_findBinIdx() (in Pharm2DSig)
__delitem__() (in _vectd)	__instance_size__ (in SmilesMolSupplier)	_findHydAtoms() (in Chem.Features.FeatDirUtils)
__delitem__() (in _vecti)	__instance_size__ (in SmilesWriter)	_findHydAtoms() (in Chem.Features.FeatDirUtilsRD)
__delitem__() (in _vectj)	__instance_size__ (in TDTMolSupplier)	_fingerprinterInit() (in FingerprinterDetails)
__div__() (in Point2D)	__instance_size__ (in TDTWriter)	_finish() (in RandomAccessDbResultSet)
__div__() (in Point3D)	__instance_size__ (in DiscreteValueVect)	_float_tol (in ML.Data.Quantize)
__div__() (in PointND)	__instance_size__ (in ExplicitBitVect)	_fontsStartId (in Chem.CDXMLWriter)
__doc__ (in DataStructs)	__instance_size__ (in IntSparseIntVect)	_gacRecurse() (in RecapHierarchyNode)
__eq__() (in pySparseIntVect)	__instance_size__ (in LongSparseIntVect)	_GenerateRandomEnsemble() (in ML.DecTree.BuildSigTree)
__eq__() (in IntSparseIntVect)	__instance_size__ (in SparseBitVect)	_GenPoints() (in Cluster)
__eq__() (in LongSparseIntVect)	__instance_size__ (in Point2D)	_GenVarTable() (in ML.Data.Quantize)
__getattr__() (in Logger)	__instance_size__ (in Point3D)	_getAllTriangles() (in Chem.Subshape.SubshapeAligner)
__getinitargs__() (in FreeChemicalFeature)	__instance_size__ (in PointND)	_getBinId() (in ML.NaiveBayes.ClassificationModel)
__getinitargs__() (in MolCatalog)	__instance_size__ (in UniformGrid3D_)	_getBondOffset() (in MolDrawing)
__getinitargs__() (in MolCatalogEntry)	__instance_size__ (in BitCorrMatGenerator)	_GetCountDict() (in Chem.GraphDescriptors)
__getinitargs__() (in Mol)	__instance_size__ (in InfoBitRanker)	_getFeatDict() (in Chem.Pharm3D.EmbedLib)
__getinitargs__() (in FragCatalog)	__instance_size__ (in HierarchicalClusterPicker)	_getLinePoints() (in Chem.Draw.aggCanvas)
__getinitargs__() (in DiscreteValueVect)	__instance_size__ (in MaxMinPicker)	_getLinePoints() (in Chem.Draw.spingCanvas)
__getinitargs__() (in ExplicitBitVect)	__instance_size__ (in _listSt6vectorIiSaIiEE)	_GetLocalError() (in ML.DecTree.PruneTree)
__getinitargs__() (in IntSparseIntVect)	__instance_size__ (in _listi)	_getOffsetBondPts() (in MolDrawing)
__getinitargs__() (in LongSparseIntVect)	__instance_size__ (in _vectSs)	_GetTetrahedralFeatVect() (in Chem.Features.FeatDirUtilsRD)
__getinitargs__() (in SparseBitVect)	__instance_size__ (in _vectSt6vectorIdSaIdEE)	_getVectNormal() (in Chem.Features.ShowFeats)
__getinitargs__() (in Point2D)	__instance_size__ (in _vectSt6vectorIiSaIiEE)	_globalArrowCGO (in Chem.Features.ShowFeats)
__getinitargs__() (in Point3D)	__instance_size__ (in _vectSt6vectorIjSaIjEE)	_globalSphereCGO (in Chem.Features.ShowFeats)
__getinitargs__() (in PointND)	__instance_size__ (in _vectd)	_greet (in Chem.ChemUtils.TemplateExpand)
__getinitargs__() (in UniformGrid3D_)	__instance_size__ (in _vecti)	_HAcceptors() (in Chem.Lipinski)
__getitem__() (in FastSDMolSupplier)	__instance_size__ (in _vectj)	_HasSubstructMatchStr() (in Chem.rdchem)
__getitem__() (in RandomAccessDbFpSupplier)	__invert__() (in BitVect)	_HDonors() (in Chem.Lipinski)
__getitem__() (in TopNScreener)	__invert__() (in ExplicitBitVect)	_HeightFirstSplit() (in ML.Cluster.ClusterUtils)
__getitem__() (in Generator)	__invert__() (in SparseBitVect)	_Heteroatoms() (in Chem.Lipinski)
__getitem__() (in Pharm2DSig)	__ior__() (in pySparseIntVect)	_hkDeltas() (in Chem.GraphDescriptors)
__getitem__() (in RandomAccessDbMolSupplier)	__ior__() (in UniformGrid3D_)	_indexCombinations (in Chem.Pharm2D.Utils)
__getitem__() (in _ROAtomSeq)	__isub__() (in pySparseIntVect)	_Init() (in Chem.Crippen)
__getitem__() (in _ROBondSeq)	__isub__() (in DiscreteValueVect)	_init() (in Chem.Pharm2D.Gobbi_Pharm2D)
__getitem__() (in _listPN5RDKit4AtomE)	__isub__() (in IntSparseIntVect)	_initColumnNamesAndTypes() (in DbResultBase)
__getitem__() (in _listPN5RDKit4BondE)	__isub__() (in LongSparseIntVect)	_initializeFeats() (in FeatMap)
__getitem__() (in SDMolSupplier)	__isub__() (in Point2D)	_initializeFeats() (in Pharmacophore)
__getitem__() (in SmilesMolSupplier)	__isub__() (in Point3D)	_initializeMatrices() (in Pharmacophore)
__getitem__() (in TDTMolSupplier)	__isub__() (in PointND)	_InitKeys() (in Chem.MACCSkeys)
__getitem__() (in BitVect)	__isub__() (in UniformGrid3D_)	_initLocals() (in Pharm2DSig)
__getitem__() (in SparseBitVect)	__iter__() (in FastSDMolSupplier)	_initMemberData() (in ShapeWithSkeleton)
__getitem__() (in LazySig)	__iter__() (in ThresholdScreener)	_initMemberData() (in SkeletonPoint)
__getitem__() (in pySparseIntVect)	__iter__() (in TopNScreener)	_initMemberData() (in SubshapeShape)
__getitem__() (in TopNContainer)	__iter__() (in MolSupplier)	_initPatterns() (in SmartsFilter)
__getitem__() (in VectCollection)	__iter__() (in _listPN5RDKit4AtomE)	_initPatterns() (in SmartsRemover)
__getitem__() (in DiscreteValueVect)	__iter__() (in _listPN5RDKit4BondE)	_InitScoreTable() (in DataStructs.BitEnsembleDb)
__getitem__() (in ExplicitBitVect)	__iter__() (in SDMolSupplier)	_initTopN() (in TopNScreener)
__getitem__() (in IntSparseIntVect)	__iter__() (in SmilesMolSupplier)	_insertBlock() (in Dbase.DbUtils)
__getitem__() (in LongSparseIntVect)	__iter__() (in TDTMolSupplier)	_InstallDescriptors() (in Chem.MolSurf)
__getitem__() (in SparseBitVect)	__iter__() (in pySparseIntVect)	_javaExe (in Chem.Draw.DrawUtils)
__getitem__() (in RandomAccessDbResultSet)	__iter__() (in DbResultBase)	_LabuteHelper() (in Chem.MolSurf)
__getitem__() (in Point2D)	__iter__() (in VLibNode)	_lazyDataSeq (in VLib.NodeLib.DbPickleSupplier)
__getitem__() (in Point3D)	__iter__() (in _lazyDataSeq)	_levels (in RDLogger)
__getitem__() (in PointND)	__iter__() (in _listSt6vectorIiSaIiEE)	_listi (in rdBase)
__getitem__() (in Composite)	__iter__() (in _listi)	_listPN5RDKit4AtomE (in Chem.rdchem)
__getitem__() (in MLDataSet)	__iter__() (in _vectSs)	_listPN5RDKit4BondE (in Chem.rdchem)
__getitem__() (in Forest)	__iter__() (in _vectSt6vectorIdSaIdEE)	_listSt6vectorIiSaIiEE (in rdBase)
__getitem__() (in GenericPicker)	__iter__() (in _vectSt6vectorIiSaIiEE)	_LoadPatterns() (in Chem.Fragments)
__getitem__() (in _listSt6vectorIiSaIiEE)	__iter__() (in _vectSt6vectorIjSaIjEE)	_log2 (in ML.InfoTheory.entropy)
__getitem__() (in _listi)	__iter__() (in _vectd)	_log2() (in Chem.GraphDescriptors)
__getitem__() (in _vectSs)	__iter__() (in _vecti)	_log2val (in Chem.GraphDescriptors)
__getitem__() (in _vectSt6vectorIdSaIdEE)	__iter__() (in _vectj)	_LoggerGetLog() (in Logger)
__getitem__() (in _vectSt6vectorIiSaIiEE)	__len__() (in FastSDMolSupplier)	_LookUpBondOrder() (in Chem.GraphDescriptors)
__getitem__() (in _vectSt6vectorIjSaIjEE)	__len__() (in RandomAccessDbFpSupplier)	_LookupDist() (in ML.Cluster.Murtagh)
__getitem__() (in _vectd)	__len__() (in TopNScreener)	_loopOverMatchingFeats() (in FeatMap)
__getitem__() (in _vecti)	__len__() (in Generator)	_MAXCACHE (in re)
__getitem__() (in _vectj)	__len__() (in Pharm2DSig)	_maxPathLen (in Chem.AtomPairs.Pairs)
__getstate__() (in Pharm2DSig)	__len__() (in RandomAccessDbMolSupplier)	_NewPyFindStartPoints() (in ML.Data.Quantize)
__getstate__() (in VectCollection)	__len__() (in _ROAtomSeq)	_NewPyRecurseOnBounds() (in ML.Data.Quantize)
__getstate__() (in PointND)	__len__() (in _ROBondSeq)	_nextDisplayId (in Chem.DSViewer)
__iadd__() (in pySparseIntVect)	__len__() (in _listPN5RDKit4AtomE)	_NextLine() (in FeatMapParser)
__iadd__() (in DiscreteValueVect)	__len__() (in _listPN5RDKit4BondE)	_nextMatch() (in ThresholdScreener)
__iadd__() (in IntSparseIntVect)	__len__() (in SDMolSupplier)	_NormalizeTForm() (in ML.Data.Transforms)
__iadd__() (in LongSparseIntVect)	__len__() (in SmilesMolSupplier)	_NumAdjacencies() (in Chem.GraphDescriptors)
__iadd__() (in Point2D)	__len__() (in TDTMolSupplier)	_numCombDict (in Chem.Pharm2D.Utils)
__iadd__() (in Point3D)	__len__() (in BitVect)	_NumMatches() (in Chem.Lipinski)
__iadd__() (in PointND)	__len__() (in SparseBitVect)	_nVal() (in Chem.GraphDescriptors)
__iadd__() (in UniformGrid3D_)	__len__() (in LazySig)	_offsetDblBond() (in MolDrawing)
__iand__() (in pySparseIntVect)	__len__() (in pySparseIntVect)	_parsePoint() (in FeatMapParser)
__iand__() (in UniformGrid3D_)	__len__() (in TopNContainer)	_patternOrder (in Chem.Crippen)
__idiv__() (in Point2D)	__len__() (in VectCollection)	_picks (in GenericPicker)
__idiv__() (in Point3D)	__len__() (in DiscreteValueVect)	_processVoteList() (in ML.ScreenComposite)
__idiv__() (in PointND)	__len__() (in ExplicitBitVect)	_Pruner() (in ML.DecTree.PruneTree)
__imul__() (in pySparseIntVect)	__len__() (in SparseBitVect)	_public_attrs_ (in CompositeServer)
__imul__() (in Point2D)	__len__() (in RandomAccessDbResultSet)	_public_attrs_ (in DescriptorServer)
__imul__() (in Point3D)	__len__() (in Point2D)	_public_methods_ (in CompositeServer)
__imul__() (in PointND)	__len__() (in Point3D)	_public_methods_ (in DescriptorServer)
__init__() (in Displayable)	__len__() (in PointND)	_pyGetAtomContribs() (in Chem.Crippen)
__init__() (in MolViewer)	__len__() (in Cluster)	_pyLabuteHelper() (in Chem.MolSurf)
__init__() (in Font)	__len__() (in Composite)	_PyRecurseOnBounds() (in ML.Data.Quantize)
__init__() (in MolDrawing)	__len__() (in Forest)	_randGen (in RDRandom)
__init__() (in FastSDMolSupplier)	__len__() (in GenericPicker)	_rawD (in Chem.EState.AtomTypes)
__init__() (in FeatMapParser)	__len__() (in _listSt6vectorIiSaIiEE)	_ReadPatts() (in Chem.Crippen)
__init__() (in FeatMapPoint)	__len__() (in _listi)	_reg_clsid_ (in CompositeServer)
__init__() (in FeatMap)	__len__() (in _vectSs)	_reg_clsid_ (in DescriptorServer)
__init__() (in DbFpSupplier)	__len__() (in _vectSt6vectorIdSaIdEE)	_reg_progid_ (in CompositeServer)
__init__() (in ForwardDbFpSupplier)	__len__() (in _vectSt6vectorIiSaIiEE)	_reg_progid_ (in DescriptorServer)
__init__() (in RandomAccessDbFpSupplier)	__len__() (in _vectSt6vectorIjSaIjEE)	_RemapInput() (in Composite)
__init__() (in FingerprinterDetails)	__len__() (in _vectd)	_ROAtomSeq (in Chem.rdchem)
__init__() (in SimilarityScreener)	__len__() (in _vecti)	_ROBondSeq (in Chem.rdchem)
__init__() (in ThresholdScreener)	__len__() (in _vectj)	_RotatableBonds() (in Chem.Lipinski)
__init__() (in TopNScreener)	__mul__() (in pySparseIntVect)	_roundtripTests (in Dbase.StorageUtils)
__init__() (in FragmentMatcher)	__mul__() (in Point2D)	_runDetails (in ML.BuildComposite)
__init__() (in Generator)	__mul__() (in Point3D)	_runDetails (in ML.GrowComposite)
__init__() (in SigFactory)	__mul__() (in PointND)	_scaleAndCenter() (in MolDrawing)
__init__() (in Pharm2DSig)	__ne__() (in IntSparseIntVect)	_scaleMetric() (in ML.Cluster.ClusterVis)
__init__() (in ExcludedVolume)	__ne__() (in LongSparseIntVect)	_ScoreToDb() (in DataStructs.BitEnsembleDb)
__init__() (in Pharmacophore)	__or__() (in BitVect)	_screenerInit() (in FingerprinterDetails)
__init__() (in MolViewer)	__or__() (in pySparseIntVect)	_SelectFeatures() (in ML.FeatureSelect.CMIM)
__init__() (in RecapHierarchyNode)	__or__() (in DiscreteValueVect)	_server (in Chem.PyMol)
__init__() (in ShapeWithSkeleton)	__or__() (in ExplicitBitVect)	_SetStreamIndices() (in SDMolSupplier)
__init__() (in SkeletonPoint)	__or__() (in IntSparseIntVect)	_setup() (in KNNModel)
__init__() (in SubshapeShape)	__or__() (in LongSparseIntVect)	_ShortestPathsMatch() (in Chem.Pharm2D.Generate)
__init__() (in DbMolSupplier)	__or__() (in SparseBitVect)	_sigVersion (in Chem.Pharm2D.Signature)
__init__() (in ForwardDbMolSupplier)	__reduce__() (in Mol)	_simpleTest() (in ML.DecTree.TreeVis)
__init__() (in RandomAccessDbMolSupplier)	__safe_for_unpickling__ (in FreeChemicalFeature)	_smartsPatterns (in Chem.Crippen)
__init__() (in MolSupplier)	__safe_for_unpickling__ (in MolCatalog)	_sortHelper() (in ML.Cluster.ClusterUtils)
__init__() (in ChemicalReaction)	__safe_for_unpickling__ (in MolCatalogEntry)	_splashMessage (in Chem.FeatFinderCLI)
__init__() (in FreeChemicalFeature)	__safe_for_unpickling__ (in Mol)	_StandardTForm() (in ML.Data.Transforms)
__init__() (in MolCatalog)	__safe_for_unpickling__ (in FragCatalog)	_SubForAtomicVars() (in ML.Descriptors.Parser)
__init__() (in MolCatalogEntry)	__safe_for_unpickling__ (in DiscreteValueVect)	_SubForCompoundDescriptors() (in ML.Descriptors.Parser)
__init__() (in MolChemicalFeature)	__safe_for_unpickling__ (in ExplicitBitVect)	_SubMethodArgs() (in ML.Descriptors.Parser)
__init__() (in MolChemicalFeatureFactory)	__safe_for_unpickling__ (in IntSparseIntVect)	_take() (in Dbase.DbUtils)
__init__() (in AtomPairsParameters)	__safe_for_unpickling__ (in LongSparseIntVect)	_test() (in Chem.AllChem)
__init__() (in Atom)	__safe_for_unpickling__ (in SparseBitVect)	_test() (in Chem.AtomPairs.Pairs)
__init__() (in Bond)	__safe_for_unpickling__ (in Point2D)	_test() (in Chem.AtomPairs.Torsions)
__init__() (in Conformer)	__safe_for_unpickling__ (in Point3D)	_test() (in Chem.AtomPairs.Utils)
__init__() (in EditableMol)	__safe_for_unpickling__ (in PointND)	_test() (in Chem.Descriptors)
__init__() (in Mol)	__safe_for_unpickling__ (in UniformGrid3D_)	_test() (in Chem.FeatMaps.FeatMapParser)
__init__() (in PeriodicTable)	__setattr__() (in Logger)	_test() (in Chem.FeatMaps.FeatMapPoint)
__init__() (in RingInfo)	__setitem__() (in _listPN5RDKit4AtomE)	_test() (in Chem.FeatMaps.FeatMapUtils)
__init__() (in _ROAtomSeq)	__setitem__() (in _listPN5RDKit4BondE)	_test() (in Chem.FeatMaps.FeatMaps)
__init__() (in _ROBondSeq)	__setitem__() (in BitVect)	_test() (in Chem.Fingerprints.DbFpSupplier)
__init__() (in _listPN5RDKit4AtomE)	__setitem__() (in SparseBitVect)	_test() (in Chem.FragmentMatcher)
__init__() (in _listPN5RDKit4BondE)	__setitem__() (in pySparseIntVect)	_test() (in Chem.MACCSkeys)
__init__() (in FragCatGenerator)	__setitem__() (in DiscreteValueVect)	_test() (in Chem.Pharm3D.EmbedLib)
__init__() (in FragCatParams)	__setitem__() (in ExplicitBitVect)	_test() (in Chem.TemplateAlign)
__init__() (in FragCatalog)	__setitem__() (in IntSparseIntVect)	_test() (in DataStructs.BitUtils)
__init__() (in FragFPGenerator)	__setitem__() (in LongSparseIntVect)	_test() (in DataStructs.LazySignature)
__init__() (in SDMolSupplier)	__setitem__() (in SparseBitVect)	_test() (in DataStructs.SparseIntVect)
__init__() (in SDWriter)	__setitem__() (in PointND)	_test() (in DataStructs.VectCollection)
__init__() (in SmilesMolSupplier)	__setitem__() (in MLDataSet)	_test() (in Dbase.Pubmed.PubmedUtils)
__init__() (in SmilesWriter)	__setitem__() (in _listSt6vectorIiSaIiEE)	_test() (in Dbase.Pubmed.Searches)
__init__() (in TDTMolSupplier)	__setitem__() (in _listi)	_test() (in Dbase.StorageUtils)
__init__() (in TDTWriter)	__setitem__() (in _vectSs)	_test() (in ML.Data.DataUtils)
__init__() (in BitEnsemble)	__setitem__() (in _vectSt6vectorIdSaIdEE)	_test() (in ML.Data.SplitData)
__init__() (in BitVect)	__setitem__() (in _vectSt6vectorIiSaIiEE)	_test() (in ML.DecTree.TreeUtils)
__init__() (in SparseBitVect)	__setitem__() (in _vectSt6vectorIjSaIjEE)	_test() (in ML.KNN.DistFunctions)
__init__() (in LazySig)	__setitem__() (in _vectd)	_test() (in PySVD.SVDSimilarity)
__init__() (in pySparseIntVect)	__setitem__() (in _vecti)	_test() (in SimDivFilters.SimilarityPickers)
__init__() (in TopNContainer)	__setitem__() (in _vectj)	_test() (in VLib.Filter)
__init__() (in VectCollection)	__setstate__() (in Pharm2DSig)	_test() (in VLib.Node)
__init__() (in DiscreteValueVect)	__setstate__() (in VectCollection)	_test() (in VLib.NodeLib.DbMolSupply)
__init__() (in ExplicitBitVect)	__setstate__() (in PointND)	_test() (in VLib.NodeLib.DbPickleSupplier)
__init__() (in IntSparseIntVect)	__str__() (in FeatMap)	_test() (in VLib.NodeLib.SDSupply)
__init__() (in LongSparseIntVect)	__str__() (in Pharmacophore)	_test() (in VLib.NodeLib.SmartsMolFilter)
__init__() (in SparseBitVect)	__str__() (in Composite)	_test() (in VLib.NodeLib.SmartsRemover)
__init__() (in DbConnect)	__str__() (in Forest)	_test() (in VLib.NodeLib.SmilesDupeFilter)
__init__() (in CDXImageTransformer)	__str__() (in TreeNode)	_test() (in VLib.NodeLib.SmilesOutput)
__init__() (in CactvsImageTransformer)	__str__() (in Network)	_test() (in VLib.NodeLib.SmilesSupply)
__init__() (in RDImageTransformer)	__sub__() (in pySparseIntVect)	_test() (in VLib.Output)
__init__() (in ReportLabImageTransformer)	__sub__() (in DiscreteValueVect)	_test() (in VLib.Supply)
__init__() (in DbResultBase)	__sub__() (in IntSparseIntVect)	_test() (in VLib.Transform)
__init__() (in DbResultSet)	__sub__() (in LongSparseIntVect)	_test1 (in ML.DecTree.TreeUtils)
__init__() (in RandomAccessDbResultSet)	__sub__() (in Point2D)	_testChain() (in ML.DecTree.PruneTree)
__init__() (in JournalArticleRecord)	__sub__() (in Point3D)	_testRandom() (in ML.DecTree.PruneTree)
__init__() (in LinkRecord)	__sub__() (in PointND)	_testSpecific() (in ML.DecTree.PruneTree)
__init__() (in Record)	__test__ (in Dbase.StorageUtils)	_times (in Chem.Pharm3D.EmbedLib)
__init__() (in SummaryRecord)	__test__ (in ML.DecTree.TreeUtils)	_ToClusters() (in ML.Cluster.Murtagh)
__init__() (in ForceField)	__test__ (in PySVD.SVDSimilarity)	_TPSAContribs() (in Chem.MolSurf)
__init__() (in Point2D)	__test__ (in VLib.NodeLib.SmartsRemover)	_trianglesInPharmacophore (in Chem.Pharm2D.Utils)
__init__() (in Point3D)	__VERSION_STRING (in Chem.BuildFragmentCatalog)	_UpdateLength() (in Cluster)
__init__() (in PointND)	__VERSION_STRING (in Chem.Fingerprints.ClusterMols)	_usage (in Chem.ChemUtils.TemplateExpand)
__init__() (in UniformGrid3D_)	__VERSION_STRING (in Chem.Fingerprints.FingerprintMols)	_usage (in Chem.Features.ShowFeats)
__init__() (in Callable)	__VERSION_STRING (in Chem.Fingerprints.MolSimilarity)	_usageDoc (in Chem.Fingerprints.ClusterMols)
__init__() (in Logger)	__VERSION_STRING (in ML.AnalyzeComposite)	_usageDoc (in Chem.Fingerprints.FingerprintMols)
__init__() (in Foo)	__VERSION_STRING (in ML.BuildComposite)	_usageDoc (in Chem.Fingerprints.MolSimilarity)
__init__() (in ClusterRenderer)	__VERSION_STRING (in ML.EnrichPlot)	_validate() (in _lazyDataSeq)
__init__() (in Cluster)	__VERSION_STRING (in ML.GrowComposite)	_vectd (in rdBase)
__init__() (in BayesComposite)	__VERSION_STRING (in ML.ScreenComposite)	_vecti (in rdBase)
__init__() (in Composite)	__warningregistry__ (in Chem)	_vectj (in rdBase)
__init__() (in MLDataSet)	__xor__() (in BitVect)	_vectSs (in rdBase)
__init__() (in MLQuantDataSet)	__xor__() (in ExplicitBitVect)	_vectSt6vectorIdSaIdEE (in rdBase)
__init__() (in DecTreeNode)	__xor__() (in SparseBitVect)	_vectSt6vectorIiSaIiEE (in rdBase)
__init__() (in Forest)	_addCoarseAndMediumGrids() (in SubshapeAligner)	_vectSt6vectorIjSaIjEE (in rdBase)
__init__() (in QuantTreeNode)	_AddDataToDb() (in Dbase.DbUtils)	_verbose (in Chem.Pharm2D.Generate)
__init__() (in SigTreeNode)	_AdjustColHeadings() (in Dbase.DbUtils)	_verbose (in Chem.Pharm2D.Matcher)
__init__() (in TreeNode)	_alphanum (in re)	_verbose (in Chem.Pharm2D.Signature)
__init__() (in CompoundDescriptorCalculator)	_ApplyNodeScales() (in ML.DecTree.TreeVis)	_verbose (in Chem.Pharm2D.Utils)
__init__() (in DescriptorCalculator)	_AssignClusterLocations() (in ClusterRenderer)	_verbose (in ML.BuildComposite)
__init__() (in MolecularDescriptorCalculator)	_AssignPointLocations() (in ClusterRenderer)	_verbose (in ML.DecTree.PruneTree)
__init__() (in BitClusterer)	_AssignSymmetryClasses() (in Chem.GraphDescriptors)	_verbose (in ML.GrowComposite)
__init__() (in BitCorrMatGenerator)	_availTransforms (in ML.Data.Transforms)	_version (in Chem.ChemUtils.TemplateExpand)
__init__() (in InfoBitRanker)	_batikJar (in Chem.Draw.DrawUtils)	_version (in Chem.FeatFinderCLI)
__init__() (in KNNClassificationModel)	_batikLoc (in Chem.Draw.DrawUtils)	_version (in Chem.Features.ShowFeats)
__init__() (in KNNModel)	_BreadthFirstSplit() (in ML.Cluster.ClusterUtils)	_version() (in rdBase)
__init__() (in KNNRegressionModel)	_buildCanonArrowhead() (in Chem.Features.ShowFeats)	_VertexDegrees() (in Chem.GraphDescriptors)
__init__() (in ModelPackage)	_BuildFp() (in DbFpSupplier)	_welcomeMessage (in Chem.Features.ShowFeats)
__init__() (in NaiveBayesClassifier)	_BuildMol() (in DbMolSupplier)
__init__() (in Sigmoid)	_cache (in re)