RDKit::SparseIntVect< IndexType > Class Template Reference

a class for efficiently storing sparse vectors of ints More...

#include <SparseIntVect.h>

List of all members.

Public Types
typedef std::map< IndexType, int >	StorageType
Public Member Functions
	SparseIntVect ()
	SparseIntVect (IndexType length)
	initialize with a particular length
	SparseIntVect (const SparseIntVect< IndexType > &other)
	Copy constructor.
	SparseIntVect (const std::string pkl)
	constructor from a pickle
	SparseIntVect (const char *pkl, const unsigned int len)
	constructor from a pickle
	~SparseIntVect ()
	destructor (doesn't need to do anything)
int	getVal (IndexType idx) const
	return the value at an index
int	operator[] (IndexType idx) const
void	setVal (IndexType idx, int val)
	set the value at an index
IndexType	getLength () const
	returns the length
int	getTotalVal () const
	returns the sum of all the elements in the vect
const StorageType &	getNonzeroElements () const
	returns our nonzero elements as a map(IndexType->int)
SparseIntVect< IndexType > &	operator &= (const SparseIntVect< IndexType > &other)
const SparseIntVect< IndexType >	operator & (const SparseIntVect< IndexType > &other) const
SparseIntVect< IndexType > &	operator|= (const SparseIntVect< IndexType > &other)
const SparseIntVect< IndexType >	operator| (const SparseIntVect< IndexType > &other) const
SparseIntVect< IndexType > &	operator+= (const SparseIntVect< IndexType > &other)
const SparseIntVect< IndexType >	operator+ (const SparseIntVect< IndexType > &other) const
SparseIntVect< IndexType > &	operator-= (const SparseIntVect< IndexType > &other)
const SparseIntVect< IndexType >	operator- (const SparseIntVect< IndexType > &other) const
bool	operator== (const SparseIntVect< IndexType > &v2) const
bool	operator!= (const SparseIntVect< IndexType > &v2) const
std::string	toString () const
	returns a binary string representation (pickle)
void	fromString (const std::string &txt)

---

Detailed Description

template<typename IndexType>
class RDKit::SparseIntVect< IndexType >

a class for efficiently storing sparse vectors of ints

Definition at line 23 of file SparseIntVect.h.

---

Member Typedef Documentation

template<typename IndexType>

typedef std::map<IndexType,int> RDKit::SparseIntVect< IndexType >::StorageType

Definition at line 25 of file SparseIntVect.h.

---

Constructor & Destructor Documentation

template<typename IndexType>

RDKit::SparseIntVect< IndexType >::SparseIntVect

(

)

[inline]

Definition at line 27 of file SparseIntVect.h.

template<typename IndexType>

RDKit::SparseIntVect< IndexType >::SparseIntVect

(

IndexType

length

)

[inline]

initialize with a particular length

Definition at line 30 of file SparseIntVect.h.

template<typename IndexType>

RDKit::SparseIntVect< IndexType >::SparseIntVect

(

const SparseIntVect< IndexType > &

other

)

[inline]

Copy constructor.

Definition at line 33 of file SparseIntVect.h.

References RDKit::SparseIntVect< IndexType >::d_data, and RDKit::SparseIntVect< IndexType >::d_length.

template<typename IndexType>

RDKit::SparseIntVect< IndexType >::SparseIntVect

(

const std::string

pkl

)

[inline]

constructor from a pickle

Definition at line 39 of file SparseIntVect.h.

template<typename IndexType>

RDKit::SparseIntVect< IndexType >::SparseIntVect	(	const char *	pkl,
		const unsigned int	len
	)			[inline]

constructor from a pickle

Definition at line 43 of file SparseIntVect.h.

template<typename IndexType>

RDKit::SparseIntVect< IndexType >::~SparseIntVect

(

)

[inline]

destructor (doesn't need to do anything)

Definition at line 48 of file SparseIntVect.h.

---

Member Function Documentation

template<typename IndexType>

int RDKit::SparseIntVect< IndexType >::getVal

(

IndexType

idx

)

const [inline]

return the value at an index

Definition at line 51 of file SparseIntVect.h.

Referenced by RDKit::SparseIntVect< IndexType >::operator[](), and RDKit::updateFromSequence().

template<typename IndexType>

int RDKit::SparseIntVect< IndexType >::operator[]

(

IndexType

idx

)

const [inline]

Definition at line 62 of file SparseIntVect.h.

References RDKit::SparseIntVect< IndexType >::getVal().

template<typename IndexType>

void RDKit::SparseIntVect< IndexType >::setVal	(	IndexType	idx,
		int	val
	)			[inline]

set the value at an index

Definition at line 65 of file SparseIntVect.h.

Referenced by RDKit::updateFromSequence().

template<typename IndexType>

IndexType RDKit::SparseIntVect< IndexType >::getLength

(

)

const [inline]

returns the length

Definition at line 76 of file SparseIntVect.h.

Referenced by RDKit::DiceSimilarity().

template<typename IndexType>

int RDKit::SparseIntVect< IndexType >::getTotalVal

(

)

const [inline]

returns the sum of all the elements in the vect

Definition at line 79 of file SparseIntVect.h.

Referenced by RDKit::DiceSimilarity().

template<typename IndexType>

const StorageType& RDKit::SparseIntVect< IndexType >::getNonzeroElements

(

)

const [inline]

returns our nonzero elements as a map(IndexType->int)

Definition at line 90 of file SparseIntVect.h.

Referenced by RDKit::DiceSimilarity().

template<typename IndexType>

SparseIntVect<IndexType>& RDKit::SparseIntVect< IndexType >::operator &=

(

const SparseIntVect< IndexType > &

other

)

[inline]

this is a "fuzzy" intesection, the final value of each element is equal to the minimum from the two vects.

Definition at line 99 of file SparseIntVect.h.

References RDKit::SparseIntVect< IndexType >::d_data, and RDKit::SparseIntVect< IndexType >::d_length.

template<typename IndexType>

const SparseIntVect<IndexType> RDKit::SparseIntVect< IndexType >::operator &

(

const SparseIntVect< IndexType > &

other

)

const [inline]

Definition at line 130 of file SparseIntVect.h.

template<typename IndexType>

SparseIntVect<IndexType>& RDKit::SparseIntVect< IndexType >::operator|=

(

const SparseIntVect< IndexType > &

other

)

[inline]

this is a "fuzzy" union, the final value of each element is equal to the maximum from the two vects.

Definition at line 139 of file SparseIntVect.h.

References RDKit::SparseIntVect< IndexType >::d_data, and RDKit::SparseIntVect< IndexType >::d_length.

template<typename IndexType>

const SparseIntVect<IndexType> RDKit::SparseIntVect< IndexType >::operator|

(

const SparseIntVect< IndexType > &

other

)

const [inline]

Definition at line 170 of file SparseIntVect.h.

template<typename IndexType>

SparseIntVect<IndexType>& RDKit::SparseIntVect< IndexType >::operator+=

(

const SparseIntVect< IndexType > &

other

)

[inline]

Definition at line 176 of file SparseIntVect.h.

References RDKit::SparseIntVect< IndexType >::d_data, and RDKit::SparseIntVect< IndexType >::d_length.

template<typename IndexType>

const SparseIntVect<IndexType> RDKit::SparseIntVect< IndexType >::operator+

(

const SparseIntVect< IndexType > &

other

)

const [inline]

Definition at line 206 of file SparseIntVect.h.

template<typename IndexType>

SparseIntVect<IndexType>& RDKit::SparseIntVect< IndexType >::operator-=

(

const SparseIntVect< IndexType > &

other

)

[inline]

Definition at line 212 of file SparseIntVect.h.

References RDKit::SparseIntVect< IndexType >::d_data, and RDKit::SparseIntVect< IndexType >::d_length.

template<typename IndexType>

const SparseIntVect<IndexType> RDKit::SparseIntVect< IndexType >::operator-

(

const SparseIntVect< IndexType > &

other

)

const [inline]

Definition at line 242 of file SparseIntVect.h.

template<typename IndexType>

bool RDKit::SparseIntVect< IndexType >::operator==

(

const SparseIntVect< IndexType > &

v2

)

const [inline]

Definition at line 247 of file SparseIntVect.h.

References RDKit::SparseIntVect< IndexType >::d_data, and RDKit::SparseIntVect< IndexType >::d_length.

template<typename IndexType>

bool RDKit::SparseIntVect< IndexType >::operator!=

(

const SparseIntVect< IndexType > &

v2

)

const [inline]

Definition at line 253 of file SparseIntVect.h.

template<typename IndexType>

std::string RDKit::SparseIntVect< IndexType >::toString

(

)

const [inline]

returns a binary string representation (pickle)

Definition at line 258 of file SparseIntVect.h.

References ci_SPARSEINTVECT_VERSION, and RDKit::streamWrite().

template<typename IndexType>

void RDKit::SparseIntVect< IndexType >::fromString

(

const std::string &

txt

)

[inline]

Definition at line 279 of file SparseIntVect.h.

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The documentation for this class was generated from the following file:

• SparseIntVect.h