Source Code for Module rdkit.Dbase.Pubmed.QueryParams

 1  # $Id: QueryParams.py 997 2009-02-25 06:12:43Z glandrum $ 
 2  # 
 3  # Copyright (C) 2003-2006 Rational Discovery LLC 
 4  # 
 5  #   @@ All Rights Reserved  @@ 
 6  # 
 7  import copy 
 8   
 9  urlBase="http://eutils.ncbi.nlm.nih.gov/entrez/eutils" 
10  searchBase=urlBase+"/esearch.fcgi" 
11  summaryBase=urlBase+"/esummary.fcgi" 
12  fetchBase=urlBase+"/efetch.fcgi" 
13  linkBase=urlBase+"/elink.fcgi" 
14  # for links to pubmed web pages: 
15  queryBase="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi" 
16   
17  _details = { 
18    'db':'pubmed', 
19    'retmode':'xml', 
20    'tool':'RDPMTools', 
21    'email':'Info@RationalDiscovery.com', 
22    } 
23   
24 -def details(): 
25    return copy.copy(_details) 
26   
27  # FIX: Allow PMID searches 
28  searchableFields={ 
29    "Author":("AU","Authors' Name "), 
30    "Keyword":("MH","MeSH keyword"), 
31    "Substance":("NM","Substance Name"), 
32    "Title":("TI","Text from the article title"), 
33    "Title/Abstract":("TIAB","Text from the article title and/or abstract"), 
34    "Registry Number":("RN","CAS Registry Number"), 
35    "Subject":("SB","Pubmed Subject Subset (tox,aids,cancer,bioethics,cam,history,space,systematic)"), 
36    "Journal":("TA","Journal Name"), 
37    "Year":("DP","Publication Date"), 
38    "Affiliation":("AD","Authors' affiliation"), 
39    } 
40  searchableFieldsOrder=[ 
41    "Author", 
42    "Keyword", 
43    "Title", 
44    "Title/Abstract", 
45    "Substance", 
46    "Registry Number", 
47    "Subject", 
48    "Journal", 
49    "Year", 
50    "Affiliation", 
51    ] 
52