ExplicitBitVect.h

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//
// Copyright (c) 2003-208 greg Landrum and Rational Discovery LLC
//  Copyright (c) 2014, Novartis Institutes for BioMedical Research Inc.
//
//  @@ All Rights Reserved @@
//  This file is part of the RDKit.
//  The contents are covered by the terms of the BSD license
//  which is included in the file license.txt, found at the root
//  of the RDKit source tree.
//
#include <RDGeneral/export.h>
#ifndef __RD_EXPLICITBITVECTS_H__
#define __RD_EXPLICITBITVECTS_H__
 
#include <RDGeneral/BoostStartInclude.h>
#include <boost/dynamic_bitset.hpp>
#include <RDGeneral/BoostEndInclude.h>
#include "BitVect.h"
 
//! a class for bit vectors that are densely occupied
/*!
    ExplicitBitVect objects store all of their bits using
    a boost::dynamic_bitset
 
    These are very fast, but can require large amounts of memory for large,
    sparsely occupied vectors.
 
 */
class RDKIT_DATASTRUCTS_EXPORT ExplicitBitVect : public BitVect {
 public:
  ExplicitBitVect() {}
  //! initialize with a particular size;
  explicit ExplicitBitVect(unsigned int size)
      : dp_bits(nullptr), d_size(0), d_numOnBits(0) {
    _initForSize(size);
  }
  //! initialize with a particular size and all bits set
  ExplicitBitVect(unsigned int size, bool bitsSet);
  ExplicitBitVect(const ExplicitBitVect &other);
  //! construct from a string pickle
  ExplicitBitVect(const std::string &pkl);
  //! construct from a text pickle
  ExplicitBitVect(const char *, const unsigned int);
  //! construct directly from a dynamic_bitset pointer
  /// takes ownership of the pointer
  ExplicitBitVect(boost::dynamic_bitset<> *bits)
      : dp_bits(bits),
        d_size(static_cast<unsigned int>(bits->size())),
        d_numOnBits(static_cast<unsigned int>(bits->count())) {}
 
  ~ExplicitBitVect() override;
 
  ExplicitBitVect &operator=(const ExplicitBitVect &other);
  bool operator[](const unsigned int which) const override;
  bool setBit(const unsigned int which) override;
  bool unsetBit(const unsigned int which) override;
  bool getBit(const unsigned int which) const override;
 
  ExplicitBitVect operator^(const ExplicitBitVect &other) const;
  ExplicitBitVect operator&(const ExplicitBitVect &other) const;
  ExplicitBitVect operator|(const ExplicitBitVect &other) const;
  ExplicitBitVect operator~() const;
  /* concatenate two ExplicitBitVects */
  ExplicitBitVect operator+(const ExplicitBitVect &other) const;
 
  ExplicitBitVect &operator^=(const ExplicitBitVect &other);
  ExplicitBitVect &operator&=(const ExplicitBitVect &other);
  ExplicitBitVect &operator|=(const ExplicitBitVect &other);
  /* concatenate two ExplicitBitVects */
  ExplicitBitVect &operator+=(const ExplicitBitVect &other);
 
  unsigned int getNumBits() const override;
  unsigned int getNumOnBits() const override;
  unsigned int getNumOffBits() const override;
 
  void getOnBits(IntVect &v) const override;
 
  void clearBits() override { dp_bits->reset(); }
  std::string toString() const override;
 
  boost::dynamic_bitset<> *dp_bits{nullptr};  //!< our raw storage
 
  bool operator==(const ExplicitBitVect &o) const {
    return *dp_bits == *o.dp_bits;
  }
  bool operator!=(const ExplicitBitVect &o) const {
    return *dp_bits != *o.dp_bits;
  }
 
 private:
  unsigned int d_size{0};
  unsigned int d_numOnBits{0};
  void _initForSize(const unsigned int size) override;
};
 
#endif