RDKit
Open-source cheminformatics and machine learning.
RDKit::RandomSampleAllBBsStrategy Class Reference

This is a class for randomly enumerating reagents that ensures all reagents. More...

#include <RandomSampleAllBBs.h>

Inheritance diagram for RDKit::RandomSampleAllBBsStrategy:
RDKit::EnumerationStrategyBase

Public Member Functions

 RandomSampleAllBBsStrategy ()
 
void initializeStrategy (const ChemicalReaction &, const EnumerationTypes::BBS &)
 
virtual const char * type () const
 
virtual const EnumerationTypes::RGROUPSnext ()
 The current permutation {r1, r2, ...}. More...
 
virtual boost::uint64_t getPermutationIdx () const
 Returns how many permutations have been processed by this strategy. More...
 
virtual operator bool () const
 
EnumerationStrategyBasecopy () const
 copy the enumeration strategy complete with current state More...
 
- Public Member Functions inherited from RDKit::EnumerationStrategyBase
 EnumerationStrategyBase ()
 
virtual ~EnumerationStrategyBase ()
 
void initialize (const ChemicalReaction &reaction, const EnumerationTypes::BBS &building_blocks)
 
const EnumerationTypes::RGROUPSgetPosition () const
 The current position in the enumeration. More...
 
boost::uint64_t getNumPermutations () const
 
bool skip (boost::uint64_t skipCount)
 

Additional Inherited Members

- Static Public Attributes inherited from RDKit::EnumerationStrategyBase
static const boost::uint64_t EnumerationOverflow
 
- Protected Member Functions inherited from RDKit::EnumerationStrategyBase
void internalInitialize (const EnumerationTypes::RGROUPS &rgroups)
 
- Protected Attributes inherited from RDKit::EnumerationStrategyBase
EnumerationTypes::RGROUPS m_permutation
 
EnumerationTypes::RGROUPS m_permutationSizes
 
boost::uint64_t m_numPermutations
 

Detailed Description

This is a class for randomly enumerating reagents that ensures all reagents.

RandomSampleAllBBsStrategy Randomly sample rgroup indices

basic usage:

std::vector<MOL_SPTR_VECT> bbs;
bbs.push_back( bbs_for_reactants_1 );
bbs.push_back( bbs_for_reactants_2 );

RandomSampleAllBBsStrategy rgroups;
rgroups.initialize(rxn, bbs);
for(size_t i=0; i<num_samples && rgroups; ++i) {
  MOL_SPTR_VECT rvect = getReactantsFromRGroups(bbs, rgroups.next());
  std::vector<MOL_SPTR_VECT> lprops = rxn.RunReactants(rvect);
  ...
}

See EnumerationStrategyBase for more details and usage.

Definition at line 67 of file RandomSampleAllBBs.h.

Constructor & Destructor Documentation

RDKit::RandomSampleAllBBsStrategy::RandomSampleAllBBsStrategy ( )
inline

Member Function Documentation

EnumerationStrategyBase* RDKit::RandomSampleAllBBsStrategy::copy ( ) const
inlinevirtual

copy the enumeration strategy complete with current state

Implements RDKit::EnumerationStrategyBase.

Definition at line 130 of file RandomSampleAllBBs.h.

References RDKit::EnumerationStrategyBase::m_permutationSizes, and RandomSampleAllBBsStrategy().

virtual boost::uint64_t RDKit::RandomSampleAllBBsStrategy::getPermutationIdx ( ) const
inlinevirtual

Returns how many permutations have been processed by this strategy.

Implements RDKit::EnumerationStrategyBase.

Definition at line 125 of file RandomSampleAllBBs.h.

void RDKit::RandomSampleAllBBsStrategy::initializeStrategy ( const ChemicalReaction ,
const EnumerationTypes::BBS  
)
inlinevirtual
virtual const EnumerationTypes::RGROUPS& RDKit::RandomSampleAllBBsStrategy::next ( )
inlinevirtual

The current permutation {r1, r2, ...}.

Implements RDKit::EnumerationStrategyBase.

Definition at line 108 of file RandomSampleAllBBs.h.

References RDKit::EnumerationStrategyBase::m_permutation, and RDKit::EnumerationStrategyBase::m_permutationSizes.

virtual RDKit::RandomSampleAllBBsStrategy::operator bool ( ) const
inlinevirtual

returns true if there are more permutations left random enumerators may always return true...

Implements RDKit::EnumerationStrategyBase.

Definition at line 128 of file RandomSampleAllBBs.h.

virtual const char* RDKit::RandomSampleAllBBsStrategy::type ( ) const
inlinevirtual

Reimplemented from RDKit::EnumerationStrategyBase.

Definition at line 105 of file RandomSampleAllBBs.h.


The documentation for this class was generated from the following file: