#include <SubstructMatch.h>

Public Member Functions
	SubstructMatchParameters ()

Public Attributes
bool	useChirality = false

bool	useEnhancedStereo = false

bool	aromaticMatchesConjugated = false

bool	useQueryQueryMatches = false

bool	useGenericMatchers = false

bool	recursionPossible = true
	Allow recursive queries.

bool	uniquify = true
	uniquify (by atom index) match results

unsigned int	maxMatches = 1000
	maximum number of matches to return

int	numThreads = 1

std::vector< std::string >	atomProperties

std::vector< std::string >	bondProperties

std::function< bool(const ROMol &mol, const std::vector< unsigned int > &match)>	extraFinalCheck

unsigned int	maxRecursiveMatches
	matching should return

bool	specifiedStereoQueryMatchesUnspecified

Detailed Description

Definition at line 41 of file SubstructMatch.h.

Constructor & Destructor Documentation

◆ SubstructMatchParameters()

RDKit::SubstructMatchParameters::SubstructMatchParameters ( )

inline

Definition at line 74 of file SubstructMatch.h.

Member Data Documentation

◆ aromaticMatchesConjugated

bool RDKit::SubstructMatchParameters::aromaticMatchesConjugated = false

Aromatic and conjugated bonds match each other

Definition at line 46 of file SubstructMatch.h.

◆ atomProperties

std::vector<std::string> RDKit::SubstructMatchParameters::atomProperties

atom properties that must be equivalent in order to match

Definition at line 60 of file SubstructMatch.h.

◆ bondProperties

std::vector<std::string> RDKit::SubstructMatchParameters::bondProperties

bond properties that must be equivalent in order to match

Definition at line 62 of file SubstructMatch.h.

◆ extraFinalCheck

std::function<bool(const ROMol &mol, const std::vector<unsigned int> &match)> RDKit::SubstructMatchParameters::extraFinalCheck

a function to be called at the end to validate a match

Definition at line 66 of file SubstructMatch.h.

◆ maxMatches

unsigned int RDKit::SubstructMatchParameters::maxMatches = 1000

maximum number of matches to return

Definition at line 54 of file SubstructMatch.h.

Referenced by RDKit::GeneralizedSubstruct::hasSubstructMatch(), RDKit::SubstructMatch(), RDKit::SubstructMatch(), RDKit::SubstructMatch(), and RDKit::SubstructMatch().

◆ maxRecursiveMatches

unsigned int RDKit::SubstructMatchParameters::maxRecursiveMatches

Initial value:

=

1000

matching should return

maximum number of matches that the recursive substructure

Definition at line 68 of file SubstructMatch.h.

◆ numThreads

int RDKit::SubstructMatchParameters::numThreads = 1

number of threads to use when multi-threading is possible. 0 selects the number of concurrent threads supported by the hardware negative values are added to the number of concurrent threads supported by the hardware

Definition at line 55 of file SubstructMatch.h.

Referenced by RDKit::SubstructMatch(), and RDKit::SubstructMatch().

◆ recursionPossible

bool RDKit::SubstructMatchParameters::recursionPossible = true

Allow recursive queries.

Definition at line 52 of file SubstructMatch.h.

Referenced by RDKit::SubstructLibrary::countMatches(), RDKit::SubstructLibrary::countMatches(), RDKit::SubstructLibrary::getMatches(), RDKit::SubstructLibrary::getMatches(), RDKit::SubstructLibrary::hasMatch(), RDKit::SubstructLibrary::hasMatch(), RDKit::SubstructMatch(), RDKit::SubstructMatch(), RDKit::SubstructMatch(), and RDKit::SubstructMatch().

◆ specifiedStereoQueryMatchesUnspecified

bool RDKit::SubstructMatchParameters::specifiedStereoQueryMatchesUnspecified

Initial value:

=

false

If set, query atoms and bonds with specified stereochemistry will match atoms and bonds with unspecified stereochemistry

Definition at line 71 of file SubstructMatch.h.

◆ uniquify

bool RDKit::SubstructMatchParameters::uniquify = true

uniquify (by atom index) match results

Definition at line 53 of file SubstructMatch.h.

Referenced by RDKit::SubstructMatch(), and RDKit::SubstructMatch().

◆ useChirality

bool RDKit::SubstructMatchParameters::useChirality = false

Use chirality in determining whether or not atoms/bonds match

Definition at line 42 of file SubstructMatch.h.

Referenced by RDKit::SubstructLibrary::countMatches(), RDKit::SubstructLibrary::countMatches(), RDKit::SubstructLibrary::getMatches(), RDKit::SubstructLibrary::getMatches(), RDKit::SubstructLibrary::hasMatch(), RDKit::SubstructLibrary::hasMatch(), RDKit::RGroupDecompositionParameters::RGroupDecompositionParameters(), RDKit::SubstructMatch(), RDKit::SubstructMatch(), RDKit::SubstructMatch(), and RDKit::SubstructMatch().

◆ useEnhancedStereo

bool RDKit::SubstructMatchParameters::useEnhancedStereo = false

Use enhanced stereochemistry in determining whether atoms/bonds match

Definition at line 44 of file SubstructMatch.h.

◆ useGenericMatchers

bool RDKit::SubstructMatchParameters::useGenericMatchers = false

Looks for generic atoms in the query and uses them as part of the matching

Definition at line 50 of file SubstructMatch.h.

◆ useQueryQueryMatches

bool RDKit::SubstructMatchParameters::useQueryQueryMatches = false

Consider query-query matches, not just simple matches

Definition at line 48 of file SubstructMatch.h.