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| DrawMolMCH (const ROMol &mol, const std::string &legend, int width, int height, MolDrawOptions &drawOptions, DrawText &textDrawer, const std::map< int, std::vector< DrawColour > > &highlight_atom_map, const std::map< int, std::vector< DrawColour > > &highlight_bond_map, const std::map< int, double > &highlight_radii, const std::map< int, int > &highlight_linewidth_multipliers, int confId=-1) |
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| DrawMolMCH (const DrawMol &)=delete |
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| DrawMolMCH (DrawMol &&)=delete |
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DrawMolMCH & | operator= (const DrawMol &)=delete |
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DrawMolMCH & | operator= (DrawMol &&)=delete |
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void | extractHighlights (double scale) override |
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virtual void | extractMCHighlights ()=0 |
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void | getAtomRadius (unsigned int atomIdx, double &xradius, double &yradius) const |
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virtual | ~DrawMol ()=default |
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| DrawMol (const ROMol &mol, const std::string &legend, int width, int height, const MolDrawOptions &drawOptions, DrawText &textDrawer, const std::vector< int > *highlightAtoms=nullptr, const std::vector< int > *highlightBonds=nullptr, const std::map< int, DrawColour > *highlightAtomMap=nullptr, const std::map< int, DrawColour > *highlightBondMap=nullptr, const std::vector< std::pair< DrawColour, DrawColour > > *bondColours=nullptr, const std::map< int, double > *highlight_radii=nullptr, bool includeAnnotations=true, int confId=-1, bool isReactionMol=false) |
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| DrawMol (int width, int height, const MolDrawOptions &drawOptions, DrawText &textDrawer, double xmin, double xmax, double ymin, double ymax, double scale, double fontscale) |
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| DrawMol (const DrawMol &)=delete |
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| DrawMol (DrawMol &&)=delete |
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DrawMol & | operator= (const DrawMol &)=delete |
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DrawMol & | operator= (DrawMol &&)=delete |
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void | createDrawObjects () |
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void | finishCreateDrawObjects () |
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void | initDrawMolecule (const ROMol &mol) |
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void | extractAll (double scale) |
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void | extractAtomCoords () |
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void | extractAtomSymbols () |
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void | extractBonds () |
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void | extractRegions () |
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void | extractAttachments () |
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void | extractMolNotes () |
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void | extractStereoGroups () |
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void | extractAtomNotes () |
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void | extractBondNotes () |
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void | extractRadicals () |
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void | extractSGroupData () |
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void | extractVariableBonds () |
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void | extractBrackets () |
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void | extractLinkNodes () |
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void | extractCloseContacts () |
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void | resolveAtomSymbolClashes () |
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void | calculateScale () |
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void | findExtremes () |
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void | changeToDrawCoords () |
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void | draw (MolDraw2D &drawer) const |
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void | drawRadicals (MolDraw2D &drawer) const |
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void | resetEverything () |
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void | shrinkToFit (bool withPadding=true) |
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std::pair< std::string, OrientType > | getAtomSymbolAndOrientation (const Atom &atom) const |
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std::string | getAtomSymbol (const Atom &atom, OrientType orientation) const |
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OrientType | getAtomOrientation (const Atom &atom) const |
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void | partitionForLegend () |
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void | extractLegend () |
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void | calcMeanBondLength () |
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void | makeStandardBond (Bond *bond, double doubleBondOffset) |
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void | makeQueryBond (Bond *bond, double doubleBondOffset) |
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void | makeDoubleBondLines (Bond *bond, double doubleBondOffset, const std::pair< DrawColour, DrawColour > &cols) |
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void | makeTripleBondLines (Bond *bond, double doubleBondOffset, const std::pair< DrawColour, DrawColour > &cols) |
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void | makeWedgedBond (Bond *bond, const std::pair< DrawColour, DrawColour > &cols) |
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void | makeWavyBond (Bond *bond, double offset, const std::pair< DrawColour, DrawColour > &cols) |
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void | makeDativeBond (Bond *bond, double offset, const std::pair< DrawColour, DrawColour > &cols) |
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void | makeZeroBond (Bond *bond, const std::pair< DrawColour, DrawColour > &cols, const DashPattern &dashPattern) |
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void | adjustBondEndsForLabels (int begAtIdx, int endAtIdx, Point2D &begCds, Point2D &endCds) const |
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void | newBondLine (const Point2D &pt1, const Point2D &pt2, const DrawColour &col1, const DrawColour &col2, int atom1Idx, int atom2Idx, int bondIdx, const DashPattern &dashPattern) |
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std::pair< DrawColour, DrawColour > | getBondColours (Bond *bond) |
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void | makeContinuousHighlights (double scale) |
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void | makeAtomCircleHighlights () |
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void | makeAtomEllipseHighlights (double lineWidth) |
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void | makeBondHighlightLines (double lineWidth, double scale) |
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void | calcAnnotationPosition (const Atom *atom, DrawAnnotation &annot) const |
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void | calcAnnotationPosition (const Bond *bond, DrawAnnotation &annot) const |
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double | getNoteStartAngle (const Atom *atom) const |
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int | doesNoteClash (const DrawAnnotation &annot) const |
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int | doesRectClash (const StringRect &rect, double padding) const |
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OrientType | calcRadicalRect (const Atom *atom, StringRect &rad_rect) const |
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void | getDrawTransformers (Point2D &trans, Point2D &scale, Point2D &toCentre) const |
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Point2D | getDrawCoords (const Point2D &atCds, const Point2D &trans, const Point2D &scaleFactor, const Point2D &toCentre) const |
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Point2D | getDrawCoords (const Point2D &atCds) const |
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Point2D | getDrawCoords (int atnum) const |
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Point2D | getAtomCoords (const Point2D &screenCds) const |
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Point2D | getAtomCoords (int atnum) const |
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double | getScale () const |
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double | getFontScale () const |
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void | setScale (double newScale, double newFontScale, bool ignoreFontLimits=true) |
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void | setTransformation (const DrawMol &sourceMol) |
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void | setOffsets (double xOffset, double yOffset) |
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void | tagAtomsWithCoords () |
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void | transformAll (const Point2D *trans=nullptr, Point2D *scale=nullptr, const Point2D *toCentre=nullptr) |
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Point2D | transformPoint (const Point2D &pt, const Point2D *trans=nullptr, Point2D *scale=nullptr, const Point2D *toCentre=nullptr) const |
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void | calcDoubleBondLines (double offset, const Bond &bond, Point2D &l1s, Point2D &l1f, Point2D &l2s, Point2D &l2f) const |
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void | bondInsideRing (const Bond &bond, double offset, Point2D &l2s, Point2D &l2f) const |
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void | bondNonRing (const Bond &bond, double offset, Point2D &l2s, Point2D &l2f) const |
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void | doubleBondTerminal (Atom *at1, Atom *at2, double offset, Point2D &l1s, Point2D &l1f, Point2D &l2s, Point2D &l2f) const |
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Point2D | doubleBondEnd (unsigned int at1, unsigned int at2, unsigned int at3, double offset, bool trunc) const |
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void | calcTripleBondLines (double offset, const Bond &bond, Point2D &l1s, Point2D &l1f, Point2D &l2s, Point2D &l2f) |
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void | findOtherBondVecs (const Atom *atom, const Atom *otherAtom, std::vector< Point2D > &otherBondVecs) const |
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void | adjustBondsOnSolidWedgeEnds () |
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void | smoothBondJoins () |
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void | makeHighlightEnd (const Atom *end1, const Atom *end2, double lineWidth, const std::vector< Atom * > &end1HighNbrs, std::vector< Point2D > &points) |
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DrawColour | getColour (int atom_idx) const |
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const std::map< int, std::vector< DrawColour > > & | mcHighlightAtomMap_ |
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const std::map< int, std::vector< DrawColour > > & | mcHighlightBondMap_ |
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const std::map< int, int > & | highlightLinewidthMultipliers_ |
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const MolDrawOptions & | drawOptions_ |
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DrawText & | textDrawer_ |
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double | marginPadding_ |
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std::vector< int > | highlightAtoms_ |
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std::vector< int > | highlightBonds_ |
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std::map< int, DrawColour > | highlightAtomMap_ |
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std::map< int, DrawColour > | highlightBondMap_ |
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std::vector< std::pair< DrawColour, DrawColour > > | bondColours_ |
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std::map< int, double > | highlightRadii_ |
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bool | includeAnnotations_ |
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bool | isReactionMol_ |
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std::string | legend_ |
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std::unique_ptr< RWMol > | drawMol_ |
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int | confId_ |
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std::vector< Point2D > | atCds_ |
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std::vector< std::unique_ptr< DrawShape > > | bonds_ |
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std::vector< std::unique_ptr< DrawShape > > | preShapes_ |
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std::vector< std::unique_ptr< DrawShape > > | postShapes_ |
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std::vector< int > | atomicNums_ |
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std::vector< std::pair< std::string, OrientType > > | atomSyms_ |
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std::vector< std::unique_ptr< AtomSymbol > > | atomLabels_ |
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std::vector< std::unique_ptr< DrawShape > > | highlights_ |
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std::vector< std::unique_ptr< DrawAnnotation > > | annotations_ |
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std::vector< std::unique_ptr< DrawAnnotation > > | legends_ |
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std::vector< std::tuple< StringRect, OrientType, int > > | radicals_ |
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std::vector< int > | singleBondLines_ |
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int | width_ |
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int | height_ |
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int | drawWidth_ |
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int | drawHeight_ |
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double | scale_ |
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double | fontScale_ |
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double | xMin_ |
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double | yMin_ |
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double | xMax_ |
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double | yMax_ |
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double | xRange_ |
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double | yRange_ |
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double | xOffset_ = 0.0 |
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double | yOffset_ = 0.0 |
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double | meanBondLength_ = 0.0 |
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int | molHeight_ |
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int | legendHeight_ = 0 |
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bool | drawingInitialised_ = false |
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int | activeAtmIdxOffset_ = 0 |
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int | activeBndIdxOffset_ = 0 |
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bool | flexiCanvasX_ = false |
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bool | flexiCanvasY_ = false |
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Definition at line 25 of file DrawMolMCH.h.