RDKit
Open-source cheminformatics and machine learning.
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#include <MIFDescriptors.h>
Public Member Functions | |
MMFFVdWaals (const RDKit::ROMol &mol, int confId=-1, unsigned int probeAtomType=6, bool scaling=false, double cutoff=1.0) | |
constructs VdWaals object which uses MMFF94 from a molecule object | |
MMFFVdWaals (const MMFFVdWaals &other)=delete | |
MMFFVdWaals & | operator= (const MMFFVdWaals &other)=delete |
MMFFVdWaals (MMFFVdWaals &&other)=default | |
MMFFVdWaals & | operator= (MMFFVdWaals &&other)=default |
~MMFFVdWaals ()=default | |
Public Member Functions inherited from RDMIF::VdWaals | |
VdWaals ()=default | |
VdWaals (const RDKit::ROMol &mol, int confId=-1, double cutoff=1.0) | |
VdWaals (const VdWaals &other)=delete | |
VdWaals & | operator= (const VdWaals &other)=delete |
VdWaals (VdWaals &&other)=default | |
VdWaals & | operator= (VdWaals &&other)=default |
virtual | ~VdWaals ()=default |
double | operator() (double x, double y, double z, double thres) const |
returns the VdW interaction at point pt in the molecules field in [kJ mol^-1] | |
Additional Inherited Members | |
Protected Member Functions inherited from RDMIF::VdWaals | |
void | fillVectors () |
Protected Attributes inherited from RDMIF::VdWaals | |
double | d_cutoff = 1.0 |
unsigned int | d_nAtoms = 0 |
std::vector< double > | d_pos |
std::vector< double > | d_R_star_ij |
std::vector< double > | d_wellDepth |
std::unique_ptr< RDKit::ROMol > | d_mol |
Definition at line 329 of file MIFDescriptors.h.
RDMIF::MMFFVdWaals::MMFFVdWaals | ( | const RDKit::ROMol & | mol, |
int | confId = -1 , |
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unsigned int | probeAtomType = 6 , |
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bool | scaling = false , |
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double | cutoff = 1.0 |
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) |
constructs VdWaals object which uses MMFF94 from a molecule object
mol | molecule object |
confId | conformation id which is used to get positions of atoms (default: -1) |
probeAtomType | MMFF94 atom type for the probe atom (default: 6, sp3 oxygen) |
cutoff | minimum cutoff distance [A] (default: 1.0) |
scaling | scaling of VdW parameters to take hydrogen bonds into account (default: false) |
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