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RDKit
Open-source cheminformatics and machine learning.
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Namespaces | |
namespace | details |
Classes | |
class | SearchResults |
class | Synthon |
class | SynthonSet |
class | SynthonSpace |
class | SynthonSpaceFingerprintSearcher |
struct | SynthonSpaceFPHitSet |
struct | SynthonSpaceHitSet |
class | SynthonSpaceRascalSearcher |
class | SynthonSpaceSearcher |
struct | SynthonSpaceSearchParams |
class | SynthonSpaceSubstructureSearcher |
Functions | |
RDKIT_SYNTHONSPACESEARCH_EXPORT void | convertTextToDBFile (const std::string &inFilename, const std::string &outFilename, bool &cancelled, const FingerprintGenerator< std::uint64_t > *fpGen=nullptr) |
std::string | formattedIntegerString (std::int64_t value) |
Variables | |
constexpr unsigned int | PATT_FP_NUM_BITS = 1024 |
const std::vector< std::string > | CONNECTOR_SYMBOLS {"[U]", "[Np]", "[Pu]", "[Am]"} |
constexpr unsigned int | MAX_CONNECTOR_NUM {4} |
RDKIT_SYNTHONSPACESEARCH_EXPORT void RDKit::SynthonSpaceSearch::convertTextToDBFile | ( | const std::string & | inFilename, |
const std::string & | outFilename, | ||
bool & | cancelled, | ||
const FingerprintGenerator< std::uint64_t > * | fpGen = nullptr |
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Convert the text file into the binary DB file in our format. Equivalent to readTextFile() followed by writeDBFile(). If a fingerprint generator is provided, fingerprints will be created for all the synthons, which can be time-consuming.
inFilename | name of the text file to read |
outFilename | name of the binary file to write |
cancelled | whether it received a SIGINT |
fpGen | optional fingerprint generator |
std::string RDKit::SynthonSpaceSearch::formattedIntegerString | ( | std::int64_t | value | ) |
Format an integer with spaces every 3 digits for ease of reading.
const std::vector<std::string> RDKit::SynthonSpaceSearch::CONNECTOR_SYMBOLS {"[U]", "[Np]", "[Pu]", "[Am]"} |
Definition at line 54 of file SynthonSpace.h.
Definition at line 55 of file SynthonSpace.h.